Table 2

Classification of allele-specific expression (ASE) SNPs responding to Marek’s disease virus (MDV) infection in broilers and layers
SNP type Broiler Layer
SNPs Genes SNPs Genes
Downstream 1,073 875 583 524
Exonic 1,780 1,501 1,123 947
Exonic Splicing 39 38 41 41
Intergenic 1,610 1,059 1,150 868
Intronic 541 394 913 691
ncRNA_exonic 1 1 3 3
Splicing 8 8 7 7
Upstream 94 88 118 109
Upstream:Downstream 47 41 41 36
UTR’3 863 694 467 414
UTR’5 74 67 81 77
UTR’3: UTR’5 2 2 1 1
Total 6,132 4,768 4,528 3718

Perumbakkam et al.

Perumbakkam et al. BMC Genomics 2013 14:64   doi:10.1186/1471-2164-14-64

Open Data