Table 3

Summary statistics of the genomic distribution of non-isogenic regions in NIL pairs
Chromosome Statsa NIL 3.05 NIL 3.05 NIL 4.10 NIL 4.10 NIL 10.03
R8 R40 R40 R55 R63
1 NB 1 2 - 6 3
NS 15 123 - 183 148
TS 2.5 17.2 - 52.4 17.1
CF 0.84% 5.7% - 17.5% 5.7%
2 NB - 2 2 3 3
NS - 113 55 96 155
TS - 16.5 8.1 11.3 17.6
CF - 7.0% 3.4% 4.8% 7.5%
3 NB
    5
b
    5
b
1 3 2
NS
    762
    1,023
52 171 46
TS
    108.0
    146.8
3.8 15.7 6.3
CF
    46.9%
    63.7%
1.6% 6.8% 2.7%
4 NB - 3
    1
b
    3
b
1
NS - 35
    275
    251
2
TS - 3.8
    39.3
    42.2
0.00
CF - 1.5%
    15.9%
    17.1%
0.0002%
5 NB 4 1 2 - -
NS 490 10 459 - -
TS 117.8 1.2 119.3 - -
CF 54.3% 0.54% 55.0% - -
6 NB 1 3 - - -
NS 25 82 - - -
TS 1.4 6.7 - - -
CF 0.85% 4.0% - - -
7 NB 1 3 2 4 1
NS 3 21 22 273 25
TS 0.15 1.8 2.0 35.4 2.3
CF 0.09% 1.0% 1.2% 20.7% 1.3%
8 NB 2 3 3 1 1
NS 94 225 398 2 16
TS 13.4 22.6 45.9 0.00 1.2
CF 7.7% 13.0% 26.3% 0.00% 0.68%
9 NB - - 3 - 2
NS - - 97 - 14
TS - - 10.3 - 1.9
CF - - 6.8% - 1.2%
10 NB 1 2 3 -
    1
b
NS 10 417 144 -
    69
TS 1.6 67.2 17.9 -
    9.0
CF 1.1% 44.9% 12.0% -
    6.0%
Totalc NB 10 (15) 19 (24) 16 (17) 17 (20) 13 (14)
NS 637 (1,399) 1,026 (2,049) 1,227 (1,502) 725 (976) 406 (475)
TS 137.0 (245.0) 136.9 (283.7) 207.3 (246.6) 114.8 (157.0) 46.3 (55.2)
GF 7.5% (12.0%) 7.5% (13.9%) 11.5% (12.1%) 6.4% (7.7%) 2.4% (2.7%)

Number, chromosomal distribution and size of detected non-isogenic blocks in each NIL pair are reported. Data referring to the chromosomes containing the introgressed QTL for the corresponding NIL pair are underlined. aStatistics: NB = number of non-isogenic blocks; NS = number of non-isogenic SNPs; TS = total size of non-isogenic blocks (Mbp); CF = non-isogenic chromosome fraction; GF = non-isogenic genome fraction. B73 RefGen1 genome size: 2,046,341,370 bp. bQTL introgression regions (see Table 1) are excluded from within-chromosome computations; cTotals are reported both excluding and including (in brackets) data from the chromosome containing the introgressed QTL in the corresponding NIL pair.

Pea et al.

Pea et al. BMC Genomics 2013 14:61   doi:10.1186/1471-2164-14-61

Open Data