Table 3

Summary of annotation of SNPs in 600 K panel to predict the genomic effect
Count Percent
Total number of SNPs in the panel 580,954
Annotation possible 492,572 84.79
Annotation result
Intergenic 266,636 54.13
Intronic 189,128 38.40
Exonic
 Non-synonymous 9,345 1.90
 Synonymous 12,069 2.45
 Stopgain/stoploss 120 0.02
1 kb Upstream 5,892 1.20
1 kb Downstream 6,456 1.31
UTR3 2,497 0.51
UTR5 302 0.06
Splicing 83 0.02
Non-coding RNA (ncRNA) 44 0.01

Kranis et al.

Kranis et al. BMC Genomics 2013 14:59   doi:10.1186/1471-2164-14-59

Open Data