Table 1

Description of sequenced samples and the number of segregating SNPs detected from different lines
Line Breed Usage Samples Analysis Number of SNPs detected (with quality score ≥20)
B1 Composite C 10 ♂ Pooled 9,525,306
B2 Composite C 10 ♂ Pooled 10,760,626
B3 Composite C 10 ♂ Pooled 9,305,545
B4 Composite C 10 ♂ Pooled 10,422,420
WEL1 White Leghorn C 10 ♂ Pooled 8,605,672
WEL2 White Leghorn C 10 ♀ Pooled 9,900,302
WEL3 White Leghorn C 10 ♀ Pooled 7,340,262
WEL4 White Leghorn C 10 ♂ Pooled 7,951,423
WEL5 White Leghorn C 10 ♂ Pooled 11,139,255
WEL6 White Leghorn C 3 ♀ Individual 2,630,343
BEL1 White Plymouth Rock C 10 ♀ Pooled 8,182,562
BEL2 White Plymouth Rock C 10 ♂ Pooled 7,876,558
BEL3 Rhode Island Red C 10 ♂ Pooled 11,593,980
BEL4 Rhode Island Red C 15 ♀ Pooled 3,236,749
BEL5 White Rock C 15 ♀ Pooled 3,751,628
RI-J Brown Leghorn E 10 ♂ Pooled 10,358,702
I1 IAH Inbred 72 E 10 ♀ Pooled 447,683
I2 IAH Inbred P E 10 ♀ Pooled 1,816,948
I3 IAH Inbred Wellcome E 10 ♀ Pooled 1,109,100
I4 IAH Inbred N E 10 ♂ Pooled 1,055,257
I5 IAH Inbred 15 l E 10 ♀ Pooled 801,052
I6 IAH Inbred 0 E 10 ♀ Pooled 1,395,679
I7 IAH Inbred 61 E 10 ♀ Pooled 803,892
I8 IAH Inbred C E 10 ♀ Pooled 603,338

(Abbreviations: B, Broiler; WEL, White egg layer; BEL, Brown egg layer; I, Inbred, IAH, Institute for Animal Health; RI, Roslin Institute; C, Commercial; E, Experimental).

Kranis et al.

Kranis et al. BMC Genomics 2013 14:59   doi:10.1186/1471-2164-14-59

Open Data