Open Access Research article

Transcriptional analysis of abdominal fat in genetically fat and lean chickens reveals adipokines, lipogenic genes and a link between hemostasis and leanness

Christopher W Resnyk1, Wilfrid Carré12, Xiaofei Wang13, Tom E Porter4, Jean Simon5, Elisabeth Le Bihan-Duval5, Michael J Duclos5, Sam E Aggrey6 and Larry A Cogburn1*

  • * Corresponding author: Larry A Cogburn

  • † Equal contributors

Author Affiliations

1 Department of Animal and Food Sciences, University of Delaware, Newark, DE 19716, USA

2 ABiMS, FR2424 CNRS-UPMC, Station Biologique, Roscoff 29680, France

3 Department of Biological Sciences, Tennessee State University, Nashville, TN 37209, USA

4 Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20742, USA

5 INRA, UR83 Recherches Avicoles, Nouzilly F-37380, France

6 Department of Poultry Science, University of Georgia, Athens, GA 30602, USA

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BMC Genomics 2013, 14:557  doi:10.1186/1471-2164-14-557

Published: 16 August 2013



This descriptive study of the abdominal fat transcriptome takes advantage of two experimental lines of meat-type chickens (Gallus domesticus), which were selected over seven generations for a large difference in abdominal (visceral) fatness. At the age of selection (9 wk), the fat line (FL) and lean line (LL) chickens exhibit a 2.5-fold difference in abdominal fat weight, while their feed intake and body weight are similar. These unique avian models were originally created to unravel genetic and endocrine regulation of adiposity and lipogenesis in meat-type chickens. The Del-Mar 14K Chicken Integrated Systems microarray was used for a time-course analysis of gene expression in abdominal fat of FL and LL chickens during juvenile development (1–11 weeks of age).


Microarray analysis of abdominal fat in FL and LL chickens revealed 131 differentially expressed (DE) genes (FDR≤0.05) as the main effect of genotype, 254 DE genes as an interaction of age and genotype and 3,195 DE genes (FDR≤0.01) as the main effect of age. The most notable discoveries in the abdominal fat transcriptome were higher expression of many genes involved in blood coagulation in the LL and up-regulation of numerous adipogenic and lipogenic genes in FL chickens. Many of these DE genes belong to pathways controlling the synthesis, metabolism and transport of lipids or endocrine signaling pathways activated by adipokines, retinoid and thyroid hormones.


The present study provides a dynamic view of differential gene transcription in abdominal fat of chickens genetically selected for fatness (FL) or leanness (LL). Remarkably, the LL chickens over-express a large number of hemostatic genes that could be involved in proteolytic processing of adipokines and endocrine factors, which contribute to their higher lipolysis and export of stored lipids. Some of these changes are already present at 1 week of age before the divergence in fatness. In contrast, the FL chickens have enhanced expression of numerous lipogenic genes mainly after onset of divergence, presumably directed by multiple transcription factors. This transcriptional analysis shows that abdominal fat of the chicken serves a dual function as both an endocrine organ and an active metabolic tissue, which could play a more significant role in lipogenesis than previously thought.

Adipogenesis; Transcriptional regulators; Hemostatic genes; Lipogenesis; Adipokines; Retinoic acid signaling; Thyroid hormone action; Polygenic trait; Visceral obesity; Gene interaction networks; Canonical metabolic/regulatory pathways