Table 3

Proportions of various CTCF binding sites that contained within the CTCF-mediated interaction regions from ChIA-PET
Comparison Total sites Sites in interaction Odds ratio P-value
Number Proportion
(A) K562
cCTCF 23,577 14,178 0.60 7.7 ~0
All CTCF excluding cCTCF 81,464 13,316 0.16
cCTCF/cCohesin 12,014 8,714 0.73 2.9 ~0
cCTCF excluding cCohesin 11,563 5,464 0.47
(B) MCF7
cCTCF 23,641 19,398 0.82 8.5 ~0
All CTCF excluding cCTCF 67,752 23,701 0.35
cCTCF/cCohesin 12,001 10,796 0.90 3.2 4×10-227
cCTCF excluding cCohesin 11,640 8,602 0.74

Li et al.

Li et al. BMC Genomics 2013 14:553   doi:10.1186/1471-2164-14-553

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