Table 1

Top 30 frequent annotated functions of homologous protein clusters in Fav1
Top frequent GO-annotated homologous protein clusters in Fav1
Go categories/Description Count Percentage
Total clusters 7,187
Total (GO-annotated) 4,677 65.1%
Molecular function 3,477 48.37%
1-Nucleic acid binding 241 5.15%
2-Protein kinase activity 218 4.66%
3-DNA binding 208 4.45%
4-Catalytic activity 173 3.70%
5-Calcium ion binding 158 3.38%
6-ATP binding 129 2.76%
7-Protein binding 119 2.54%
8-GTP binding 114 2.44%
9-Transporter activity 96 2.05%
10-Structural constituent of ribosome 82 1.75%
Biological process 776 16.59%
1-Metabolism 122 2.61%
2-Electron transport 88 1.88%
3-Intracellular signaling cascade 54 1.15%
4-Proteolysis and peptidolysis 48 1.03%
5-Protein folding 47 1.00%
6-Protein modification 31 0.66%
7-Cell adhesion 29 0.62%
8-Intracellular protein transport 26 0.56%
9-Carbohydrate metabolism 21 0.45%
10-Regulation of cell cycle 18 0.38%
Cellular component 424 6%
1-Ubiquitin ligase complex 68 1.45%
2-Integral to membrane 58 1.24%
3-Membrane 58 1.24%
4-Nucleus 46 0.98%
5-Intracellular 41 0.88%
6-Cytoplasm 26 0.56%
7-Cytoskeleton 24 0.51%
8-Nucleosome 16 0.34%
9-Chromatin 10 0.21%
10-Extracellular region 8 0.17%

Top 30 high frequent annotated homologous protein clusters under cellular component, molecular function and biological processes. Full annotation included in Additional file 9: File S8.

Pooyaei Mehr et al.

Pooyaei Mehr et al. BMC Genomics 2013 14:546   doi:10.1186/1471-2164-14-546

Open Data