Table 3

Numbers of reads per million mapping to known canine MHC genes, summarised for the various tissues plus the combined assembly (see Methods for details)
Class Gene Reference Chromosome in dog Tissue Combined
Heart Intestine Kidney Lung Skin Spleen Testis
I DLA-64 ENSCAFG00000000500 12 78.4 257.1 324.8 390.2 85.2 687.6 61.5 240.7
I DLA-79 ENSCAFG00000008234 18 0.0 0.0 14.9 0.0 15.6 3.6 0.0 10.5
I DLA-88 Precursor ENSCAFG00000000487 12 0.0 269.1 268.2 451.5 43.6 654.8 61.5 210.3
I DLA-88 ENSCAFG00000000492 12 78.4 191.4 283.1 550.9 1.0 753.0 71.7 207.8
I Tapasin ENSCAFG00000000972 12 0.0 41.9 110.2 91.8 2.1 149.2 30.7 50.8
II BTNL2 ENSCAFG00000000797 12 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
II CD74 ENSCAFG00000018101 4 52.3 71.8 143.0 145.4 0.0 338.3 41.0 88.7
II DLA-DRA ENSCAFG00000000803 12 26.1 59.8 134.1 298.4 165.2 516.6 20.5 198.3
II DQ Alpha precursor ENSCAFG00000000812 12 0.0 6.0 65.6 168.3 83.1 247.4 10.2 96.7
II HLA-DMA ENSCAFG00000000848 12 0.0 0.0 3.0 0.0 1.0 7.3 0.0 2.0
II HLA-DOA ENSCAFG00000000896 12 0.0 0.0 0.0 0.0 0.0 3.6 20.5 1.5
II HLA-DOB ENSCAFG00000000819 12 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
II HLA-DPB1 ENSCAFG00000000900 12 0.0 0.0 3.0 0.0 3.1 0.0 0.0 2.0
II HLA-DQB1 ENSCAFG00000000814 12 0.0 17.9 26.8 53.6 6.2 54.6 10.2 20.4
II HLA-DRB1 ENSCAFG00000000806 12 52.3 59.8 83.4 336.7 40.5 232.8 51.2 95.7
II IK cytokine ENSCAFG00000005869 2 52.3 6.0 62.6 38.3 128.9 36.4 61.5 84.2
II RFX3 ENSCAFG00000002053 1 0.0 47.8 8.9 0.0 0.0 0.0 61.5 8.5
III BAG6 ENSCAFG00000000575 12 130.7 131.6 122.2 122.4 4.2 80.0 706.9 89.2
III HSP70 ENSCAFG00000000641 12 2117.7 998.7 2413.4 7789.6 83.1 4565.6 624.9 1730.3
III LTA ENSCAFG00000000515 12 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
III TNF ENSCAFG00000000517 12 0.0 0.0 0.0 7.7 0.0 0.0 0.0 0.5
Total class I 156.9 759.5 1001.1 1484.5 147.6 2248.2 225.4 720.1
Total class II 183.0 269.1 530.4 1040.7 428.1 1437.0 276.6 598.0
Total class III 2248.4 1130.2 2535.6 7919.7 87.3 4645.6 1331.9 1820.0
Grand total 2588.3 2158.8 4067.1 10444.8 663.0 8330.8 1833.9 3138.1

Hoffman et al.

Hoffman et al. BMC Genomics 2013 14:52   doi:10.1186/1471-2164-14-52

Open Data