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Open Access Highly Accessed Research article

Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa)

Xiaoxia Ma1, Chaogang Shao2*, Huizhong Wang1, Yongfeng Jin3 and Yijun Meng1*

Author Affiliations

1 College of Life and Environmental Sciences, Hangzhou Normal University, Xuelin Street 16#, Xiasha, Hangzhou 310036, P. R. China

2 College of Life Sciences, Huzhou Teachers College, Xueshi Road 1#, Huzhou 313000, P. R. China

3 Institute of Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, P. R. China

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BMC Genomics 2013, 14:510  doi:10.1186/1471-2164-14-510

Published: 27 July 2013

Additional files

Additional file 1:

Data S1. List of sRNAs highly expressed in the root tips of rice.

Format: TXT Size: 6.4MB Download file

Open Data

Additional file 2:

Data S2. List of sRNAs highly expressed in the whole roots of rice.

Format: TXT Size: 480KB Download file

Open Data

Additional file 3:

Data S3. AGO1-enriched sRNAs highly expressed in the root tips of rice.

Format: TXT Size: 6KB Download file

Open Data

Additional file 4:

Data S4. AGO1-enriched sRNAs highly expressed in the whole roots of rice.

Format: TXT Size: 9KB Download file

Open Data

Additional file 5: Figure S1:

Degradome sequencing data-based validation of the targets of the AGO1-enriched sRNAs highly expressed in the root tips of rice.

Format: PDF Size: 432KB Download file

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Open Data

Additional file 6: Figure S2:

Degradome sequencing data-based validation of the targets of the AGO1-enriched sRNAs highly expressed in the whole roots of rice.

Format: PDF Size: 1MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 7: Figure S3:

Network mediated by the AGO1-enriched sRNAs highly expressed in the root tips of rice.

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Additional file 8: Figure S4:

Network mediated by the AGO1-enriched sRNAs highly expressed in the whole roots of rice.

Format: PDF Size: 20KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 9: Table S1:

Microarray data-based investigation of the expression patterns of the target genes.

Format: XLS Size: 111KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data