Table 1

Statistics on read coverage and the identified deletions
Library 1 (33x2) Library 2 (48x2) Combined library
Raw reads 45.9 M1 / 1.51 Gb2 148 M / 7.11 Gb 194 M / 8.63 Gb
Mapped reads 24.3 M / 0.80 Gb 68.4 M / 3.28 Gb 92.7 M / 4.08 Gb
Read pairs 9.41 M / 0.62 Gb 24.7 M / 2.37 Gb 34.1 M / 2.99 Gb
Ditags 7.66 M / 0.51 Gb 21.3 M / 2.05 Gb 29.0 M / 2.55 Gb
Ditags mapped to Ref-Ditags 6.73 M / 0.44 Gb 11.4 M / 1.09 Gb 18.1 M / 1.53 Gb
Ref-Ditags identified (1,509,487 in all) 794,515 (53%) 981,480 (65%) 1,024,072 (68%)
Average ditag depth on each Ref-Ditag 8.47 11.57 17.66
Genomic regions covered (Mb)3 834 (28%) 1,274 (42%) 1,336 (45%)
Median fragment length (bp) 880 1,056 1,056
Deletions identified 51 (29%) 150 (86%) 175
Average ditag depth on each deletion 5.37 4.53 5.70

1 M: counts of the reads, pairs or ditags in millions.

2Gb: Gigabases.

3Genomic regions identified in the insert regions of the experimental ditags that correspond to the reference genome.

Gong et al.

Gong et al. BMC Genomics 2013 14:51   doi:10.1186/1471-2164-14-51

Open Data