Open Access Highly Accessed Open Badges Research article

Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes

Walter L Eckalbar1, Elizabeth D Hutchins1, Glenn J Markov1, April N Allen2, Jason J Corneveaux2, Kerstin Lindblad-Toh34, Federica Di Palma3, Jessica Alföldi3, Matthew J Huentelman2 and Kenro Kusumi12*

Author Affiliations

1 School of Life Sciences, Arizona State University, PO Box 874501, Tempe, AZ, 85287-4501, USA

2 Neurogenomics Division, Translational Genomics Research Institute, 445 N. 5th St., Phoenix, AZ, 85004, USA

3 Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA

4 Science for Life Laboratory Uppsala, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden

For all author emails, please log on.

BMC Genomics 2013, 14:49  doi:10.1186/1471-2164-14-49

Published: 23 January 2013

Additional files

Additional file 1:

Table S1. Description of adult and embryonic tissues used for RNA-Seq.

Format: XLSX Size: 12KB Download file

Open Data

Additional file 2:

Table S2. Orthology assignment of ASU_Acar genes.

Format: TXT Size: 1.3MB Download file

Open Data

Additional file 3:

Table S3. Orthology assignment of unmatched ASU_Acar annotated genes by Blast2GO.

Format: TXT Size: 75KB Download file

Open Data

Additional file 4:

Table S4. Orthology assignment of unmapped transcripts by Blast2GO.

Format: TXT Size: 3MB Download file

Open Data

Additional file 5:

Figure S1. Blast2GO matches for transcripts poorly aligning to the Anocar2.0 genome assembly. The species with the highest Blast2GO matches are shown.

Format: PDF Size: 246KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data