Table 5

Classification of de novo identified putative repeat sequences
Repeat type No. of putative repeat sequences by Repeat Scout Repeat Masker result
No. of copies Masked bases (Kbp) Percentage of masked bases (%)
Transposon LINE/SINE 1,776 135,174 24,072.6 6.60%
LTR 482 12,451 2,642.4 0.72%
DNA 61 15,994 3,825.6 1.05%
Others 80 28,354 3,187.7 0.87%
Unclassified 3,911 601,647 84,920.6 23.27%
Total 6,310 893,620 118,649.0 32.51%

“Percentage of masked bases” is the percentage of masked bases against the total bases of the WGS contigs, degenerate contigs, and singletons.

Jouraku et al.

Jouraku et al. BMC Genomics 2013 14:464   doi:10.1186/1471-2164-14-464

Open Data