Table 2

Statistics of the WGS assembled sequences
Sequence type No. of sequences GC% Sequence length
Total Average Median Max
(Kbp) (bp) (bp) (bp)
contig 88,530 38.3% 186,028 (51.0%) 2,101.3 1,619 24,960
degenerate contig 246,244 38.8% 147,783 (40.5%) 600.1 558 12,183
singleton 106,455 42.0% 31,160 (8.5%) 292.7 287 727

Percentage values in the “Total” columns are the ratio of the values to the sum of the length of all the assembled sequences. N50 of the contig sequences is 2,273 bp.

Jouraku et al.

Jouraku et al. BMC Genomics 2013 14:464   doi:10.1186/1471-2164-14-464

Open Data