Additional file 1: Table S1.

Sequence accession numbers. 16S rRNA sequences were obtained from the RDP on September 01, 2009 as part of a hand-curated alignment; a larger set of 1,071 16S rRNA sequences, used only for the Fast UniFrac analysis, was downloaded from the RDP on November 9, 2010. Amino acid sequences for rpoB, rpsB, and dnaG families were obtained via AMPHORA, and corresponding DNA sequences were downloaded from NCBI GenBank on August 22, 2009 (rpoB), May 17, 2011 (rpsB), and June 10, 2011 (dnaG). For lolC, amino acid sequences were downloaded from UniProt on February 16, 2011, and corresponding DNA sequences were downloaded from EMBL-EBI on March 02, 2011.

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Riesenfeld and Pollard BMC Genomics 2013 14:419   doi:10.1186/1471-2164-14-419