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Open Access Research article

Novel aspects of grapevine response to phytoplasma infection investigated by a proteomic and phospho-proteomic approach with data integration into functional networks

Paolo Margaria, Simona Abbà and Sabrina Palmano*

Author Affiliations

Istituto di Virologia Vegetale, CNR, Strada delle Cacce 73, 10135, Torino, Italy

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BMC Genomics 2013, 14:38  doi:10.1186/1471-2164-14-38

Published: 17 January 2013

Additional files

Additional file 1:

Detailed list of the differentially expressed proteins. The following parameters are reported for each spot: sequence of the matched peptides, normalized volume values (PPM) and coefficient of variation, statistical significance. Sheet 1: healthy/infected Sypro® Ruby staining (total proteins); sheet 2: healthy/recovered Sypro® Ruby staining; sheet 3: healthy-infected ProQ Diamond staining (phosphoproteins); sheet 4: healthy-recovered ProQ Diamond staining.

Format: XLS Size: 99KB Download file

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Open Data

Additional file 2:

GO classification and KEGG map assignments of the identified V. vinifera proteins. GOslim term assignment was performed by Blast2GO. GO classification is expressed by GO Names (third column) preceded by “P” for “biological process”, “C” for cellular component and “F” for “molecular function”. The forth column of the table reports the names of the KEGG maps assigned to each protein according to the KAAS functional annotation.

Format: XLS Size: 44KB Download file

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Open Data

Additional file 3:

List of the over-represented GO categories in infected and recovered plants following Singular Enrichment Analysis. Proteins are grouped according to the GO categories to which they belong. Only the statistically significant (False discovery rate: FDR ≤0.05) GO terms are shown. “Category” indicates the main GO categories: “B”, biological process; “C”, cellular component. There were no statistically significant molecular function terms. “Number of sequences” indicates the number of proteins assigned to each GO term.

Format: XLS Size: 43KB Download file

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Open Data