Table 1

Validated SNPs and their distribution over the chromosomes
Chromosome 454-seq on cDNA from breeding lines Illumina Solexa on gDNA from breeding lines Illumina Solexa on gDNA from introgression free varieties Markers from previous analysis Total SNPs per chromosome
1 195 45 103 4 347
2 183 38 47 6 274
3 94 10 136 0 240
4 244 149 359 8 760
5 138 460 97 2 697
6 375 349 183 2 909
7 106 54 43 0 203
8 87 28 30 9 154
9 299 151 32 12 494
10 33 36 519 0 588
11 104 57 41 3 205
12 107 249 225 6 587
Unknown position 15 26 28 1 70
Total 1980 1652 1843 53 5528

A full list of the SNPs can be found in Additional file 2: Table S1.

Víquez-Zamora et al.

Víquez-Zamora et al. BMC Genomics 2013 14:354   doi:10.1186/1471-2164-14-354

Open Data