Table 1

Genes that highly correlate with volatile compounds proposed as candidate genes
Genes for volatile cluster C1
id Unigene annotation Identified by Match
PPN009B08 Protein At1g45233 HCA, CNA ppa001502 m
PPN078H01 Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1)) HCA ppa010063 m
PP1009A02 CAMP response element binding (CREB) protein HCA, CNA ppa012739 m
PPN001H09 YUP8H12R.39 protein HCA, CNA ppa005452 m
PPN066C05 Tub family, putative CNA ppa006121 m
PPN066B05 Ripening-related protein-like CNA ppa011478 m
Genes for volatile cluster C2
id Unigene annotation Identified by Match
PPN010C01 Prunus_persica transcript; similar to CRHB10 [Ceratopteris richardii (Triangle waterfern)] HCA ppa008984 m
PPN070H11 Cytochrome P450 monooxygenase CYP72A59 HCA, PC, CNA ppa006310 m
PPN059A01 0.00E+00 PC ppa013582 m
PPN026D01 no_annotation_available PC, CNA ppa009231 m
PPN037A04 Phosphatidylinositol transfer protein/retinal degeneration b protein HCA, PC ppa010020 m
Genes for volatile cluster C3
id Unigene annotation Identified by Match
PP1002E07 Omega-6 fatty acid desaturase HCA ppa007098 m
PP1001A05 Pyruvate decarboxylase 1 HCA ppa003086 m
PP1004F06 Vesicle-associated membrane protein 727 HCA ppa010737 m
PP1004G05 no_annotation_available HCA, CNA ppa004658 m
PP1004H08 no_annotation_available HCA ppa004582 m
PP1005B05 AT4g00090/F6N15_8 HCA ppa004482 m
PPN009C07 AJ533535 S3II Prunus persica cDNA clone PP_S3II_T5_SP6, mRNA sequence HCA ppa004933 m
PPN010B11 Serine-threonine protein kinase, putative HCA, PC, CNA ppa008251 m
PPN070B11 Kinase-like protein HCA ppa003659 m
PPN070D11 Protein At5g25010 HCA ppa009131 m
PPN075B07 F8K7.22 protein HCA ppa008595 m
PPN032F06 PDR-like ABC-transporter HCA, PC, CNA ppa000267 m
PPN036E10 At5g03345 HCA, CNA ppa015891 m
PPN069F09 PK11-C1 HCA, PC, CNA ppa006108 m
PPN002B03 Malus_x_domestica transcript; similar to F17O7.2 [Arabidopsis thaliana] PC ppa007712 m
PPN031F12 Novel plant SNARE 13 HCA, PC ppa010000 m
PPN031G12 Os09g0509300 protein PC, CNA ppa002575 m
PP1004C02 Calcium binding protein PC, CNA ppa011722 m
PPN051H01 At1g72790/F28P22_2 CNA ppa002494 m
Genes for volatile cluster C4
id Unigene annotation Identified by Match
PP1009D02 IAA16 protein HCA, CNA ppa011570 m
PPN027C05 PHB2 HCA, CNA ppa009505 m
PPN063A04 T25K16.5 HCA ppa011444 m
PP1000F05 Snakin-1 CNA ppa014086 m
PPN017C08 ECA1 protein CNA ppa012387 m
PPN017B08 AT3g05350/T12H1_32 CNA ppa002173 m
Genes for volatile cluster C5
id Unigene annotation Identified by Match
PPN029H12 AJ827262 S3 Prunus persica cDNA clone S312E11, mRNA sequence HCA, CNA ppa025397 m
PPN053G07 Putative pod-specific dehydrogenase SAC25 HCA, CNA ppa008709 m
PPN066C10 Cytochrome P450 HCA ppa004664 m
PPN078H04 Putative pod-specific dehydrogenase SAC25 HCA, CNA ppa008713 m
Genes for volatile cluster C7
id Unigene annotation Identified by Match
PPN030E11 PP_LEa0004N09f Peach developing fruit mesocarp HCA ppa002860 m
PPN071H07 Enolase 1 HCA ppa005779 m
PPN027H11 Phox-like HCA ppa001676 m
Genes for volatile cluster C11
id Unigene annotation Identified by Match
PPN052H12 Desaturase delta 9 CNA ppa009359m
Genes for volatile cluster C12
id Unigene annotation Identified by Match
PP1003B11 0.00E+00 HCA ppa010788 m
PP1009F04 PU1_plate44_F06 PU1 Prunus persica cDNA weakly similar to putative protein (AL161573) HCA ppa009611 m
PPN006F05 GTP-binding protein SAR1B HCA ppa011838 m
PPN033D11 Putative acid cluster protein 33 HCA ppa006430 m
Genes for volatile cluster C13
id Unigene annotation Identified by Match
PP1001G06 Cysteine protease CP1 HCA ppa005199 m
PP1004F12 Dehydrin HCA ppa005514 m
PPN018G03 Putatative tyrosine aminotransferase CNA ppa006368 m

Genes were identified by either: a Hierarchical Cluster Analysis (HCA), a simple Pearson Correlation (PC) analysis and/or a Correlation Network Analysis (CNA). For each gene, microarray id (id), the unigene annotation, and the most similar gene predicted in the peach genome (Match) are shown. The genes annotated as “0.00E+00” indicate that either no homologue was found or the homologue found has unknown function. For a detailed description of ChillPeach unigene functional annotation see Ogundiwin et al. [5].

Sánchez et al.

Sánchez et al. BMC Genomics 2013 14:343   doi:10.1186/1471-2164-14-343

Open Data