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Open Access Highly Accessed Methodology article

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

Ya Yang* and Stephen A Smith

Author Affiliations

Department of Ecology & Evolutionary Biology, University of Michigan, 830 North University Ave, Ann Arbor, MI 48109-1048, USA

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BMC Genomics 2013, 14:328  doi:10.1186/1471-2164-14-328

Published: 14 May 2013

Additional files

Additional file 1:

Length distribution of cleaned and filtered nuclear reads.

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Additional file 2:

Chimera compositions among assembled transcripts before post-processing.

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Additional file 3:

Reference coverages, chimera percentages and redundancies among assembly strategies.

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Open Data