Table 1

Sequence read counts from RNA sequencing for the 14 libraries
Kit Samples Raw reads Query reads Mappable reads
miRNAs (%) Others (%)
Illumina
A1 5,038,311 3,629,688 2,003,390(76.7) 607,629(23.3)
A2 5,643,622 3,753,814 2,030,007(71.3) 819,077(28.7)
Bioo Scientific
A1 6,506,144 4,850,351 3,395,109(85.3) 587,039(14.7)
A2 8,143,961 5,632,208 3,998,520(84.4) 741,200(15.6)
B1 7,586,416 5,129,990 2,847,137(75.4) 927,909(24.6)
B2 6,365,053 5,246,494 3,111,194(77.8) 885,208(22.2)
C1 9,039,025 2,446,141 1,490,184(75.3) 487,517(24.7)
C2 5,622,703 3,270,113 2,006,209(76.6) 612,942(23.4)
NEB
A1 7,990,894 6,575,021 4,419,868(81.5) 1,004,342(18.5)
A2 8,038,976 6,605,662 4,507,678(81.8) 1,000,301(18.2)
B1 7,257,368 6,342,279 2,653,105(61.2) 1,684,951(38.8)
B2 8,268,147 7,302,007 3,107,916(62.1) 1,898,996(37.9)
C1 9,429,406 7,138,699 4,219,991(76.5) 1,298,809(23.5)
C2 6,874,686 5,189,955 3,294,935(78.5) 900,978(21.5)
Total 101,804,712 73,112,422 43,085,243(76.2) 13,456,898(23.8)

Huang et al.

Huang et al. BMC Genomics 2013 14:319   doi:10.1186/1471-2164-14-319

Open Data