Open Access Methodology article

Discovering chromatin motifs using FAIRE sequencing and the human diploid genome

Chia-Chun Yang12, Michael J Buck3, Min-Hsuan Chen2, Yun-Fan Chen2, Hsin-Chi Lan1, Jeremy JW Chen145, Chao Cheng67 and Chun-Chi Liu245*

Author Affiliations

1 Institute of Molecular Biology, National Chung Hsing University, Taiwan, ROC

2 Institute of Genomics and Bioinformatics, National Chung Hsing University, Taiwan, ROC

3 Department of Biochemistry and the Center of Excellence in Bioinformatics and Life Sciences, State University of New York, Buffalo, NY, USA

4 Institute of Biomedical Sciences, National Chung Hsing University, Taiwan, ROC

5 Agricultural Biotechnology Center, National Chung Hsing University, Taiwan, ROC

6 Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, NH, USA

7 Institute for Quantitative Biomedical Sciences, Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth, Lebanon, NH, USA

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BMC Genomics 2013, 14:310  doi:10.1186/1471-2164-14-310

Published: 8 May 2013

Additional files

Additional file 1:

Chromatin motif lists with occurrence rates in inaccessible and accessible chromatin groups in genome-wide regions.

Format: XLSX Size: 85KB Download file

Open Data

Additional file 2:

Chromatin motif lists with TF annotations in genome-wide, intergenic and genic regions. We selected motifs from either accessible or inaccessible occurrence rate among DCSRs > 1%.

Format: XLSX Size: 52KB Download file

Open Data

Additional file 3:

Top 100 DCSR and NDCSR motifs with TF annotation.

Format: XLSX Size: 22KB Download file

Open Data