Open Access Highly Accessed Research article

Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing

Cuifang Duan12, Xavier Argout1, Virginie Gébelin1, Marilyne Summo1, Jean-François Dufayard1, Julie Leclercq1, Kuswanhadi3, Piyanuch Piyatrakul14, Julien Pirrello1, Maryannick Rio1, Antony Champion5 and Pascal Montoro1*

Author Affiliations

1 CIRAD, UMR AGAP, Montpellier, F, 34398, France

2 CATAS, RRI, Hainan, Danzhou, 571737, China

3 IRRI, Sembawa Research Centre, P.O. Box 1127, Palembang, Indonesia

4 Rubber Research Institute, Chatuchak, Bangkok, 10900, Thailand

5 IRD, UMR DIADE, Laboratoire LCM, Dakar, Senegal

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BMC Genomics 2013, 14:30  doi:10.1186/1471-2164-14-30

Published: 16 January 2013

Additional files

Additional file 1:

Amino acid sequences of partial AP2 domain from the 45 AP2/ERF members found in Xia et al. (2011).

Format: TXT Size: 3KB Download file

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Additional file 2: Figure S1:

Alignment of the AP2/ERF domains from H.brasiliensis 115 ERF family proteins. Black and light gray shading indicate identical and conserved amino acid residues, respectively. Dark gray shading indicates conserved amino acid residues in group VI-L. Green color indicates the V14, E19 residue conserved [39]; blue color indicates the residue conserved in each group individually;pink color indicates the supplementary residue in group IX The black bar and block arrows represent predicted a-helix and b-sheet regions, respectively, within the AP2/ERF domain [62]. Asterisks represent amino acid residues that directly make contact with DNA [62].

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Additional file 3:

Outputs from the DESeq analysis using read distribution for contigs of each tissue-type libraries.

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Open Data