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Open Access Highly Accessed Research article

Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

Zhen-hua Dang1, Lin-lin Zheng1, Jia Wang1, Zhe Gao1, Shu-biao Wu2, Zhi Qi1 and Ying-chun Wang1*

Author Affiliations

1 Key Laboratory of Herbage & Endemic Crop Biotechnology, and College of Life Sciences, Inner Mongolia University, Hohhot, 010020, PR China

2 School of Environmental and Rural Science, University of New England, Armidale, NSW, 2351, Australia

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BMC Genomics 2013, 14:29  doi:10.1186/1471-2164-14-29

Published: 16 January 2013

Additional files

Additional file 1:

Deposited C21-unigenes and TSA accession numbers. Sequences with no gap and length > 200 bp were selected from sample C21 and submitted to TSA database.

Format: TXT Size: 1.1MB Download file

Open Data

Additional file 2:

Deposited T43-unigenes and the TSA accession numbers. Sequences with no gap and length > 200 bp were selected from sample T43 and submitted to TSA database.

Format: TXT Size: 1.2MB Download file

Open Data

Additional file 3:

Functional annotation of all assembled unigenes, including GO, COG, and KEGG analyses. All-unigene sequences were searched against protein databases (nr, KEGG, COG) using BLASTX (E-value ≤ 10-5).

Format: XLS Size: 1.5MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4:

Summary and functional annotation of identified DEGs. Unigenes with absolute value of |log2Ratio| ≥ 1 and FDR ≤ 0.001 were identified as DEGs. GO and KEGG analysis of DEGs were based on cut-off E-value of ≤ 10-5.

Format: XLS Size: 106KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5:

Summary of DEGs enriched in KEGG pathways. Pathways and backbone gene numbers are shown in table. The q-value of all these pathways was ≤ 0.05.

Format: DOCX Size: 25KB Download file

Open Data

Additional file 6:

Transcripts related to ion transport.

Format: XLS Size: 99KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 7:

ROS scavenging system-associated transcripts.

Format: XLS Size: 123KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8:

Primers used for experimental validation.

Format: XLSX Size: 12KB Download file

Open Data