The ContigScape interface and displaying connections between contigs. A. The scaffolding of the 454LargeContigs of the Streptomyces genome using mate-pair libraries is shown. B. Hiding the contigs smaller than 2 kb in length and determining the linkages between the remaining specific contigs. C. Completing all linkages by reference, PCR, and other databases, and then obtaining the linear chromosomal sequence with terminal inverted repeats formed by two repeat contigs.
Tang et al. BMC Genomics 2013 14:289 doi:10.1186/1471-2164-14-289