Table 5

Tribe members selected for expression profiling during PST infection of wheat
Tribe no. Tribe ranking No. of proteins Average protein length (amino acids) Species distribution (No. of proteins) No. of proteins in top 100 expressed during infection No. of proteins in top 100 expressed in haustoria Members assessed for peak in expression General effector features (No. of proteins)
63 2 13 180 PST (2), PGT (5), Mel (6) 2 2 1 dpi (1) Similarity to M. lini hesp-C49 (10); Internal repeats (2); Members encoded by genes with 1 FIR ≥10Kb (2); Without PFAM annotation (11)
467 3 3 109 PST 0 3 14 dpi (1) SCRs (3); Without PFAM annotation (3)
238 10 5 112 PST 0 5 14 dpi (2) Internal repeats (2)
413 12 3 95 PST (2), PGT (1) 1 2 14 dpi (2) Y/F/WxC (2); SCRs (3); Without PFAM annotation (1)
276 13 4 288.5 PST (2), PGT (1), Mel (1) 0 2 1 dpi (1) Similarity to M. lini hesp-735 (3) and hesp-379 (1); Internal repeats (1); Without PFAM annotation (1)
351 22 4 276.5 PST (3), PGT (1) 0 3 14 dpi (1) Internal repeats (2); Without PFAM annotation (2)
317 25 4 209.5 PST (3), PGT (1) 0 3 1 dpi (1) -
308 28 4 145 PST 0 3 1 dpi (1) SCRs (3); Without PFAM annotation (3)
596 31 2 139 PST 0 2 1 dpi (1) Without PFAM annotation (2)
79 34 12 299.5 PST (8), PGT (1), Mel (3) 0 4 Stable (1) Y/F/WxC (2), LIAR (1); Members encoded by genes with 1 FIR ≥10Kb (1); Without PFAM annotation (2)
928 43 1 163 PST 1 1 6 dpi (1) Y/F/WxC (1); Without PFAM annotation (1)
1004 43 1 132 PST 1 1 6 dpi (1) Without PFAM annotation (1)
593 60 2 160 PST 0 1 1 dpi (1) Without PFAM annotation (1)
544 75 2 216 PST (1), PGT (1) 0 1 6 dpi (1) SCRs (1); Internal repeats (1); Without PFAM annotation (2)
1232 78 1 163 PST 0 1 14 dpi (1) Without PFAM annotation (1)
1118 96 1 201 PST 0 1 6 dpi (1) LIAR (1)
426 133 3 142 PST 1 1 14 dpi (1) Without PFAM annotation (1)
6 154 49 224 PST (27), PGT (21), Mel (1) 0 4 1 dpi (2), 14 dpi (1) Y/F/WxC (1), LIAR (2), RXLR (1); Without PFAM annotation (31)

dpi, days post-inoculation.

Cantu et al.

Cantu et al. BMC Genomics 2013 14:270   doi:10.1186/1471-2164-14-270

Open Data