Table 4

Secreted proteins with non-synonymous substitutions between UK isolates PST-87/7 and PST-08/21 and in tribes ranking within the top 100 potential effector tribes
Gene ID Tribe no. Tribe ranking Length (amino acids) Similarity to HESPs or fungal AVRs 1 FIR ≥10 Kb No. of repeat units SCR protein Effector motifs (amino acid position) NLS signal PFAM mapping Infected material (reads) Haust. 1 (reads) Haust. 2 (reads) Enrichment in haustoria
Fold change (log2) P value (adj)
PST130_14637 9 6 609 No No 10 No - No No 0 0 4 1.02 0.68
PST21_19014 11 14 167 No No 0 No Y/F/WxC(85); LIAR(32) No Yes 535 120 534 -0.38 0.87
PST887_17743 11 14 185 No No 0 No Y/F/WxC(103); LIAR(32) No Yes 904 167 695 -0.61 0.70
PST130_00418 8 17 176 No No 20 No - No No 6 0 361 4.15 1.00
PST21_12116 74 20 455 No No 0 No - No Yes 298 3708b 34272b 5.99 <0.001
PST130_05023 351 22 281 No No 6 No - No Yes 2475a 7368b 62158c 3.85 0.011
PST21_18360 437 23 394 No No 0 No - No No 480 5957b 15413b 5.08 0.001
PST130_00285 317 25 207 No No 0 No - No Yes 919 6699b 36240b 4.77 0.001
PST21_15642 308 28 102 No No 0 Yes - No No 209 6002b 6286a 5.96 <0.001
PST21_17946 17 39 177 No No 3 No - No No 396 417 3015 2.21 0.19
PST21_04206 456 58 515 No No 0 No - No Yes 2563a 513 1806 -0.70 0.65
PST21_20471 21 83 376 No No 13 No - No No 24 7 34 0.05 0.69
PST43_15488 111 94 94 No No 0 Yes Y/F/WxC(23) No Yes 399 0 76 -3.81 0.17
PST21_15274 111 94 91 No No 0 Yes Y/F/WxC(23) No No 64 1 24 -2.46 0.17

HESPs, Haustorial expressed secreted proteins. FIR, flanking intergenic region. SCR, small cysteine-rich. NLS, nuclear-localization signal. Haust, Haustorial library.

Genes expressed in the top 10 (a), 5 (b) and 1% (c) in a particular RNAseq dataset.

Cantu et al.

Cantu et al. BMC Genomics 2013 14:270   doi:10.1186/1471-2164-14-270

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