Table 3

Predicted gene catalogue for each PST isolate and similarity to conserved eukaryotic proteins and PGT proteins
Species/isolate No. proteins predicted Median protein length (amino acids) CEG matching sequencesa PGT matching sequencesa
PGT 20,566 266 2,596 (94.5%) -
PST-21 20,653 211 2,626 (95.6%) 13,301 (64.7%)
PST-43 21,036 197 2,637 (96.0%) 13,313 (64.7%)
PST-130 18,149 228 2,612 (95.1%) 13,214 (64.3%)
PST-87/7 20,688 161 2,508 (91.3%) 12,801 (62.2%)
PST-08/21 20,875 172 2,592 (94.3%) 13,183 (64.1%)

a BLASTP, e-value ≤ 1e-6. PGT, Puccinia graminis f. sp. tritici (Total PGT sequences: 20,566). CEG, Core eukaryotic genes (Total CEG sequences: 2,748).

Cantu et al.

Cantu et al. BMC Genomics 2013 14:270   doi:10.1186/1471-2164-14-270

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