Additional file 5.

Assessing the genetic diversity both within and between PST isolates. A. Summary of the main steps used to identify genetic variants between PST isolates. B. Diagram to illustrate how we defined heterokaryotic (het) and homokaryotic (hom) variants between isolates. C. Illustration to show how synthetic genes were generated from homokaryotic SNPs identified in Illumina reads of isolate B mapped to the reference isolate A.

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Cantu et al. BMC Genomics 2013 14:270   doi:10.1186/1471-2164-14-270