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Open Access Highly Accessed Research article

Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to ‘Candidatus Liberibacter asiaticus’ infection

Zhi-Liang Zheng1 and Yihong Zhao2

Author Affiliations

1 Plant Nutrient Signaling and Fruit Quality Improvement Laboratory, Citrus Research Institute & College of Horticulture and Landscape Architecture, Southwest University, Beibei, Chongqing, 400712, China

2 Department of Psychiatry, Columbia University, New York, NY, 10032, USA

BMC Genomics 2013, 14:27  doi:10.1186/1471-2164-14-27

Published: 16 January 2013

Additional files

Additional file 1:

A list of HLB responsive genes reported in this analysis.

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Additional file 2:

Number of overlapped genes in various HLB studies.

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Additional file 3:

A list of stage-specific HLB responsive genes.

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Additional file 4:

PCC cutoff selection and network topology characteristics.

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Additional file 5:

A list of coexpressed genes and their interactions and the GO enrichment analysis result.

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Additional file 6:

CitProbeID_AtGID annotation_GO terms.

Format: XLS Size: 3.4MB Download file

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Additional file 7:

A list of nodes and edges in six major subnetworks and nodes in some highly overrepresented GO terms.

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Additional file 8:

GO enrichment analysis of hub genes in the HLB response network.

Format: XLS Size: 1.6MB Download file

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Additional file 9:

Lists of nodes and edges in the hormone subnetworks.

Format: XLS Size: 371KB Download file

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Additional file 10:

A list of nodes and edges in the early-stage HLB response subnetwork.

Format: XLS Size: 76KB Download file

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Additional file 11:

A list of nodes and edges in the HLB response core subnetwork.

Format: XLS Size: 30KB Download file

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Additional file 12:

A list of PP2-like genes in the citrus GeneChip and the genes interacting with Cit.35955.1.S1_at.

Format: XLS Size: 40KB Download file

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