Table 3

Functional classification, putative function (BLASTp (a) or BLASTn (b)) for the isolated genes
GenBank Accession No. GI Protein ID Annotation onZea MaysGene/Homologa Score E Value Region

FI

Salt/Control

Antioxidant Defense
EU968806 GI:195642911 http://ACG40924.1 webcite Isovaleryl-CoA dehydrogenase mRNA 333 1e-90 15–30 2.96
BT018773 GI:54653554 http://NP_001150213.1 webcite Acyl-[acyl-carrier-protein] desaturasea 401 3e-111 15–30 2.60
NM_001157202 GI:226492618 http://NP_001150674.1 webcite Transaldolase 2 422 1e-116 15–30 2.81
EU958813 GI:195618201 http://ACG30931.1 webcite 3-isopropylmalate dehydratase small subunit 2 387 1e-106 15–30 3.17
NM_001155533 GI:226508813 http://NP_001149005.1 webcite Aspartate aminotransferase 654 0.0 15–30 2.02
EU960286 GI:195621147 http://ACG32404.1 webcite Acyl-CoA-binding protein 710 0.0 15–30 2.86
NM_001157741 GI:226499079 http://NP_001151213.1 webcite Dihydroflavonol-4-reductase 545 2e-154 15–30 2.54
NM_001111889 GI:162459146 http://NP_001105359.1 webcite Carbonic anhydrase 689 0.0 30–50 2.20
EU956253 GI:195613081 ACG28371.1 Phosphoserine phosphatase 765 0.0 30–50 0.46
Structural
NM_001156318 GI:226500875 NP_001149790.1 Peptidyl-prolyl isomerase/cyclophylin 366 1-100 15–30 2.06
X68678.1 GI:829147 CAA48638.1 Cyclophylin 612 0.0 15–30 2.10
NM_001154900 GI:226497771 NP_001148372.1 Zn-finger, RanBP-type, cyclophilin-related protein 1090 0.0 15–30 2.13
EU977128.1 GI:195659556 ACG49246.1 UDP-glucuronic acid decarboxylase 1267 0.0 15–30 2.11
EU975955 GI:195657210 ACG48073.1 DNA-3-methyladenine glycosylase I 172 3e-42 15–30 3.14
NM_001174192 GI:293331322 NP_001167663.1 Tubulin alpha-3 chain 824 0.0 15–30 2.82
EU957585 GI:195615745 ACG29703 Retrotransposon protein 1186 0.0 15–30 2.09
NM_001153810 GI:226532905 NP_001147282.1 Ca2+-binding protein (EF-Hand superfamily) 669 0.0 15–30 2.04
NM_001155943 GI:226506681 NP_001149415.1 CTD-phosphatase-like protein 883 0.0 15–30 2.54
BT017876 GI:54652657 TIC21 iron ion transmembrane transporter 189 2e-47 15–30 2.85
NM_001111466 GI:162458261 NP_001104936.1 Dihydrolipoamide S-acetyltransferase 651 0.0 15–30 2.47
EU952983 GI:195606541 http://ACG25101.1 webcite Threonine endopeptidase 278 4e-74 15–30 2.11
EU971467 GI:195648233 ACG43585.1 Calmodulin 577 8e-164 15–30 2.30
U29159 GI:902583 AAC49013.1 MubG1 ubiquitin gene 1227 0.0 15–30 3.39
EU963111 GI:195626797 ACG35229.1 Esterase precursor 852 0.0 15–30 2.29
NM_001174804 GI:293334320 NP_001168275.1 Translation initiation factor 4  357 7e-98 15–30 3.44
EU959748 GI:195620071 ACG31866.1 Elongation factor 1A 1426 0.0 15–30 2.82
EU968344.1 GI:195641987 ACG40462.1 60S ribosomal protein L3  370 9e-102 15–30 2.85
NM_001156254 GI:226502948 NP_001149726.1 60S ribosomal protein L5-1 800 0.0 15–30 2.30
EU970864 GI:195647027 ACG42982.1 40S ribosomal protein S19 682 0.0 15–30 2.96
EU958804 GI:195618183 ACG30922.1 40S ribosomal protein S4 436 1e-121 15–30 2.01
EU967930 GI:195641159 ACG40048.1 40S ribosomal protein S27a 710 0.0 15–30 2.07
EU952013.1 GI:195604601 ACG24131.1 30S ribosomal protein 3 401 3e-111 15–30 2.33
NM_001152240 GI:226505273 NP_001145712.1 SORBIDRAFTaSb=HSP70 cognate 933 0.0 15–30 2.08
BT085557 GI:238009749 ACR35910.1 Heat shock protein 70 cognate 837 0.0 15–30 2.19
NM_001154333 GI:226498819 NP_001147805.1 Heat shock 70 kDa protein 4 972 0.0 15–30 2.02
NM_001176042 GI:293336702 http://NP_001169513.1 webcite TIDP2694, unknown function 451 4e-126 15–30 2.91
BT083594 GI:238005823 ACR33947.1 Transmembrane 9 superfamily protein 1 precursor 429 2e-119 15–30 2.01
EU948567 GI:195600921 Unknown 355 4E-97 30–50 10.78
NM_001157043 GI:226498795 http://NP_001150515.1 webcite Dirigent-like protein pDIR9 344 7e-94 30–50 2.83
NM_001155737 GI:226504345 http://NP_001149209.1 webcite 1-aminocyclopropane-1-carboxylate oxidase ACC oxidase 442 3e-123 30–50 0.48
EU946392 GI:195598746 NP_001142128.1 Hydroxyproline-rich glycoprotein family proteina 662 0.0 30–50 2.01
BT064284 GI:223949794 ACN28981.1 Aspartic proteinase 429 2e-119 30–50 0.48
BT084696 GI:238008027 ACR35049.1 Elongation factor EF-Tsa 305 2e-82 30–50 0.47
BT061533 GI:223944292 ACN26230.1 Abhydrolase6, Hydrolase 446 2e-124 30–50 2.01
NM_001111648 GI:162461640 NP_001105118.1 Proline-rich protein; CL1298_1_ov 459 2e-128 30–50 0.25
NM_001147683 GI:226505411 http://NP_001141155.1 webcite Oligopeptidasea, Rc 813 0.0 30–50 0.28
EU967200 GI:195639699 ACG39318.1 50S ribosomal protein L 263 1e-69 30–50 0.46
BT070196 GI:224036034 CN37093.1 18S ribosomal RNA gene 838 0.0 30–50 0.48
NM_001153810 GI:226532905 NP_001147282.1 Ca2+-binding protein (EF-Hand superfamily) 411 6e-114 30–50 0.48
EU957222 GI:195615019 ACG29340.1 Transposon protein CACTA 411 7e-114 30–50 0.24
NM_001138563 GI:212722439 NP_001132035 IAA15 - auxin-responsive Aux/IAA family member  571 4e-162 30–50 0.23
NM_001148300 GI:239050004 NP_001141772 PGR5-LIKE Aa 412 2e-114 30–50 0.17
Transcription Factors
BT063988 GI:223949202 http://ACN28685.1 webcite drought-responsive factor-like transcription factora 636 0.0 15–30 2.41
NM_001155696 GI:226532553 http://NP_001149168.1 webcite RING finger, CHYzinc finger domain-containing 747 0.0 15–30 2.43
Photosynthesis
EU967333 GI:195639965 http://ACG39451.1 webcite Chlorophyll a-b binding protein CP24 241 5e-63 15–30 2.31
EU959735 GI:195620045 http://ACG31853.1 webcite CP protein 239 2e-62 15–30 2.81
AY109815 GI:21213680 Magnesium chelatase subunit chlDa 619 1e-176 15–30 2.80
EU965631 GI:195636561 ACG37749 Ribulose bisphosphate carboxylase small chain 455 3e-127 15–30 2.19
BT069905 GI:224035452 http://ACN36802.1 webcite AAA-metalloprotease FtsHa 920 0.0 30–50 0.46
EU965428 GI:195636155 http://ACG37546.1 webcite Triose phosphate/phosphate translocator 1338 0.0 30–50 0.46
NM_001111878 GI:162463911 NP_001105348.1 Oxygen-evolving enhancer protein 3-1 520 1e-146 30–50 0.48
Energy
EU953063 GI:195606701 http://ACG25181.1 webcite Glyceraldehyde-3-phosphate dehydrogenase(GAPDH) 883 0.0 15–30 2.01
BT039975 GI:194701791 ACF84980.1 Cytosolic GAPDH 660 0.0 15–30 2.54
NM_001155853 GI:226507591 http://NP_001149325.1 webcite ATP-citrate synthase 723 0.0 15–30 2.05
NM_001111964 GI:193211363 http://NP_001105434.1 webcite Adenine nucleotide translocator (ANT2) 505 3e-142 15–30 2.60
EU96468 GI:195634658 http://ACG36798.1 webcite Fructose-bisphosphate aldolase 161 2e-39 15–30 2.15
EU963078 GI:195626731 http://ACG35196.1 webcite Vacuolar ATP synthase subunit G 167 6e-41 15–30 2.00
BT086232 GI:238011099 http://ACR36585.1 webcite Vacuolar proton-inorganic pyrophosphatase 1042 0.0 15–30 2.01
NM_001155046 GI:226508897 http://NP_001148518.1 webcite Malate dehydrogenase, glyoxysomal 1158 0.0 15–30 2.06
EU952363 GI:195605301 http://NP_001169698.1 webcite 2-oxoglutarate dehydrogenase E1  326 3e-88 15–30 2.23
EU955065 GI:195610705 http://ACG27183.1 webcite Inorganic pyrophosphatase 1099 0.0 30–50 2.96
NM_001111961 GI:193211484 http://NP_001105431.1 webcite Adenine nucleotide translocator (ANT1) 278 4e-78 30–50 0.48

GI-NCBI accession number, protein ID- protein NCBI accession number, region-the leaf zone from which the gene was isolated, FI-fold induction. Letters in uppercase above the gene name mark homolog to other species: a-Arabidopsis thaliana, Rc-Ricinus communis.

Kravchik and Bernstein

Kravchik and Bernstein BMC Genomics 2013 14:24   doi:10.1186/1471-2164-14-24

Open Data