Table 1

Genome assembly statistics
S. melliferum IPMB4A S. melliferum KC3 S. citri GII3-3X
Number of chromosomal contigs 24 4 39
Combined size of chromosomal contigs (bp) 1,098,846 1,260,174 1,525,756
Estimated chromosomal size (bp) 1,380,000 1,430,000 1,820,000
Estimated coverage (%) 79.6 88.1 83.8
G+C content (%) 27.5 27.0 25.9
Coding density (%) 85.1 83.0 80.2
Protein-coding genes 932 1,222 1,905
Length distribution (Q1/Q2/Q3) (a.a.) 176/280/440 119/233/376 83/149/286
Plectrovirus proteins 11 132 375
Hypothetical proteins 337 485 519
Annotated pseudogenes1 12 12 401
rRNA operon 1 1 1
tRNA 32 31 32
Number of plasmids 0 4 7

1For S. melliferum IPMB4A, putative pseudogenes were annotated with the’/pseudo’ tag in gene feature as suggested by the NCBI GenBank guidelines and were not counted in the total number of protein-coding genes. For S. melliferum KC3 and S. citri GII3-3X, putative pseudogenes were annotated by adding the term ‘truncated’ in the CDS product description field and were included in the total number of protein-coding genes.

Lo et al.

Lo et al. BMC Genomics 2013 14:22   doi:10.1186/1471-2164-14-22

Open Data