Table 1

Summary of transcript annotations in C. albicans and C. dubliniensis
C. albicans C. dubliniensis
This study Sellam et al.b Tuch et al.b Bruno et al.b This study
Expressed genes 6016 6574 (nd) 6608 5972
Expressed annotated genesa [coding] 5541 4402 (nd) 6006 5440
Median transcript length [bp] 1400 (nd) 1237 1305* 1369
5 UTR median [bp] 76 88 99 80* 74
3 UTR median [bp] 83 84 136 117* 82
nTARs 475 2172 1437 602 532
Coding nTARs 26 11 561 13 70
Novel introns 79 (nd) (nd) 41 108
Different CDS 262 (nd) (nd) (nd) 204
Antisense transcripts 210 729 759 (nd) 176
uORF containing genes 997 (nd) (nd) (nd) 1003

nTAR = novel transcriptionally active region.

a Reference genomes for C. albicans from CGD [2010-06-14] and for C. dubliniensis from NCBI [2010-04-09].

b Data taken from orginal publications with their corresponding definitions, recalculated* or data could not be extracted (nd).

Grumaz et al.

Grumaz et al. BMC Genomics 2013 14:212   doi:10.1186/1471-2164-14-212

Open Data