Table 2

Annotation of de novo assemblies
IMG-ER PGAAP RAST
Strain
SK2 Total COGs 2050 2111 2113
Missing COGs 116 82 80
Proportion of missing COGs 8.1 5.8 5.6
Predicted genome size, Mbs 3.4
209 Total COGs 1383 1449 1476
Missing COGs 116 80 66
Proportion of missing COGs 10.5 7.3 6.0
Predicted genome size, Mbs 2.4
C103-3 Total COGs 2123 2212 2256
Missing COGs 203 154 142
Proportion of missing COGs 14.8 11.3 10.4
Predicted genome size; Mbs 4.2
320 Total COGs 2964 3079 3072
Missing COGs 132 95 97
Proportion of missing COGs 7.9 5.7 5.8
Predicted genome size, Mbs 4.8

SK2 – Alcanivorax borkumensis SK2; 209 – Flavobacterium sp. GOBB3-209; C103-3 – Flavobacterium sp. GOBB3-C103-3; 320 – Marinomonas sp. GOBB3-320. Genome size is given as Newbler default prediction. Missing COGs are COGs that are absent from the annotation compared to NC_008260 annotation in GenBank.

Kisand and Lettieri

Kisand and Lettieri BMC Genomics 2013 14:211   doi:10.1186/1471-2164-14-211

Open Data