Table 1

The eQTL hotspots and their candidate regulators from GFlasso and other previous analyses
eQTL Hotspot eQTL module size cis genes in eQTL module GFlasso Yvert et al. [[17]] Zhu et al. [[9]] Lee et al. [[8]]
*II:380000 106 NRG1 TIP1 TAT1 TEC1 ECM33 none none RDH54 SEC18 SPT7
*II:560000 722 AMN1 MAK5 CNS1 TBs1 TOS1 ARA1 SUP45 CSH1 RPB5 SDS24 ENP1 REI1 AMN1 MAK5 AMN1 CNS1 TBS1 TOS1 ARA1 SUP45 CSH1 AMN1 CNS1 TOS2 ABD1 PRP5 TRS20
*III:100000 225 LEU2 ILV6 NFS1 CIT2 PGS1 RER1 HIS4 FRM2 KCC4 LEU2 LEU2 ILV6 NFS1 CIT2 MATALPHA1 LEU2 ILV6 PGS1
*III:200000 62 MATALPHA1 MATALPHA2 PHO87 BUD5 TAF2 MATALPHA1 MATALPHA1 MATALPHA1 MATALPHA2 TBK1
IV:1500000 46 YRF1-1 YDR539W YDR541C - - -
*V:110000 45 URA3 NPP2 URA3 URA3 URA3 NPP2 PAC2
V:350000 618 RPS24A RPS8B RTT105 - - -
V:420000 405 LCP5 NSA2 - - -
V:460000 42 YER138C UBP5 RTR1 - - -
VII:50000 350 RAI1 TAD1 KAP114 - - -
*VIII:110000 147 GPA1 YAP3 ERG11 LAG1 SHO1 ETP1 YLF2 LEU5 GPA1 GPA1 GPA1 STP2 NEM1
X:20000 48 YJL225C VTH2 FSP2 REE1 - - -
XII:610000 53 TOP3 - - -
*XII:680000 185 HAP1 NEJ1 SSP120 HAP1 HAP1 HAP1 NEJ1 GSY2
XII:780000 44 REC102 PEX30 FKS1 GAS2 - - -
*XII:1070000 54 YRF1-4 YRF1-5 YLR464W YLR462W SIR3 YRF1-4 YRF1-5 YLR464W SIR3 HMG2 ECM7
*XII:70000 76 MDM1 none none ARG81 TAF13 CAC2
*XIV:490000 448 SAL1 TOP2 MKT1 THO2 MSK1 TPM1 LAT1 SWS2 none SAL1 TOP2 TOP2 MKT1 MSK1
XIV:550000 45 COG6 YIP3 HDA1 - - -
XV:90000 85 ZEO1 RFC4 HM11 INO4 NDJ1 SKM1 HAL9 - - -
*XV:180000 406 PHM7 ATG19 WRS1 RFC4 none PHM7 PHM7 ATG19 BRX1
*XV:59000 120 LSC1 YOR131C RAS1 INP53 OST2 PIN2 CAT5 none CAT5 ADE2 ORT1

* denotes a previously discovered hotspot.

Curtis et al.

Curtis et al. BMC Genomics 2013 14:196   doi:10.1186/1471-2164-14-196

Open Data