Table 3

Statistics of the Myc and S1-Pri differentially expressed genes (DEGs)
Myc 5-SAGE S1-Pri 5-SAGE
No. of genes with detected expression 1911 2732
No. of differentially expressed genes (DEGs)a 324 (17.0%) 716 (26.2%)
No of DEGs
   with homolog identified in BLASTXb 157 (48.5%) 500 (69.8%)
   with >3-fold up-regulation 295 (91.0%) 538 (75.1%)
   with GO term 146 (45.1%) 530 (74.0%)
   with KEGG ortholog 56 (17.3%) 270 (37.7%)
   unique to fruiting body-forming 22 (6.8%) 30 (4.2%)
   basidiomycetesc
   unique to C. cinerea 41 (12.7%) 22 (3.1%)
No. of enriched protein domainsd 118 115

a p<0.05 in Fisher’s exact test.

b e<10-5 in BLASTX homology search.

c Homologs identified in at least two fruiting body-forming basidiomycetes.

d p<0.05 in Fisher’s exact test.

Cheng et al.

Cheng et al. BMC Genomics 2013 14:195   doi:10.1186/1471-2164-14-195

Open Data