Table 1

N. furzeri transcriptome libraries and sequencing methods
Library Specimens used for RNA-isolation Sequencing technology Number of reads Average length (bp) Total length (Mb)
1 one male GRZ, 9 weeks, whole body; normaliseda Sanger 131,808 734 97
2 one male GRZ, 10 weeks, whole body; normaliseda 454/Roche GS-FLX 751,885 223 168
3 one male GRZ, 10 weeks, whole body 454/Roche GS-FLX 415,426 225 94
4 six male and female GRZ, 8 weeks, whole body; normalisedb 454/Roche GS-Titanium 2,351,236 369 869
5 three GRZ, 1 week, whole body Solexa/Illumina, 2 x 150 bp 89,730,910 151 6,774
6 five male GRZ, 5 weeks, skin Solexa/Illumina, 2 x 101 bp 55,410,042 101 5,596
Solexa/Illumina, 76 bp 33,947,044 76 2,579
7 five male GRZ, 5 weeks, brain Solexa/Illumina, 2 x 101 bp 60,997,820 101 6,161
Solexa/Illumina, 76 bp 36,117,265 76 2,744
8 three male GRZ, 14 weeks, skin Solexa/Illumina, 76 bp 35,963,921 76 2,733
9 three male GRZ, 14 weeks, brain Solexa/Illumina, 76 bp 27,369,310 76 2,080
10 four male MZM-0403, 5 weeks, skin Solexa/Illumina, 76 bp 31,727,935 76 2,411
11 five male MZM-0403, 5 weeks, brain Solexa/Illumina, 76 bp 34,720,289 76 2,638
12 five male MZM-0403, 31 weeks, skin Solexa/Illumina, 76 bp 30,268,649 76 2,300
13 three male MZM-0403, 31 weeks, brain Solexa/Illumina, 76 bp 31,423,327 76 2,388
467,676,512 39,632

aNormalisation was done by Evrogen.

bNormalisation was done by Vertis.

Petzold et al.

Petzold et al. BMC Genomics 2013 14:185   doi:10.1186/1471-2164-14-185

Open Data