Table 9

Summary statistics of SNPs in the Turbot 3 database
No. Contigs No. SNPs
Total number SNPs 7,030
Total contigs with SNPs 1,040
  with 4 sequences 131 270
  with 5-10 sequences 620 2,516
  with 11-20 sequences 147 926
  with 21-30 sequences 63 859
  with 31-50 sequences 40 940
  with > 50 sequences 39 1,859
Total number of transitions 2,223
  C/T 1,328
  A/G 895
Total number of transversions 2,404
  A/T 500
  A/C 746
  T/G 614
  C/G 544
Total number of indels 1,578
Tri-allelicpolymorphisms 1,044
Tetra-allelicpolymorphisms 113

Ribas et al.

Ribas et al. BMC Genomics 2013 14:180   doi:10.1186/1471-2164-14-180

Open Data