Table 5

Selection of some of the novel relevant immune-related genes identified in the Turbot 3 database
Gene name Gene abbreviation Contig length Gene Ontology E-value Species Annotation resource
DNA fragmentation factor, 40kDa, beta polypeptide DFF40 607 GO:0006917 GO:0006309 GO:0030263 2,00E-73 Danio rerio Uniref90
BCL2-like 1 BCL-XL 698 GO:0045087 GO:0045768 6,00E-19 Osmerus mordax nr
Tumor necrosis factor receptor-associated factor 2 TRAF2 528 GO:0045087 GO:0008624 GO:0050870 GO:0042981 2,00E-53 Oplegnathus fasciatus Uniref90
Interleukin 1 receptor activated kinase 1 IRAK1 842 GO:0045087 GO:0008063 GO:0006916 6,00E-28 Siniperca chuatsi Uniref90
JNK1/MAPK8-associated membrane protein JNK1/MAPK8 223 GO:0006986 GO:0030433 8,00E-23 Uniref90
Toll-interacting protein TOLLIP 401 GO:0045087 GO:0006954 GO:0045321 2,00E-55 Salmo salar nr
TNF receptor-associated factor 6 TRAF6 187 GO:0045087 GO:0006915 GO:0008063 GO:0050852 5,00E-15 Gasterosteus aculeatus nr
FYN oncogene related to SRC, FGR, YES FYN 467 GO:0006468 GO:0016310 1,00E-74 Danio rerio nr
Cytoplasmic protein 1 NCK1 382 GO:0042110 GO:0050852 GO:0042102 4,00E-38 Danio rerio nr
Cytoplasmic protein NCK2 NCK2 779 GO:0042102 GO:0042110 3,00E-12 Amniota Uniref90
Disks large homolog 1 DLG1 402 GO:0070830 GO:0044419 2,00E-09 Xenopus tropicalis nr
Mitogen-activated protein kinase 8 COT 705 GO:0031295 GO:0000165 GO:0000186 1,00E-07 Tetraodon nigroviridis Uniref90
T-cell-specific surface glycoprotein CD28 CD28 689 GO:0031295 GO:0006959 GO:0008624 GO:0042102 GO:0045768 GO:0002863 GO:0045086 GO:0045066 2,00E-18 Salmo salar nr
GRB2-related adaptor protein 2 GADS 721 GO:0031295 GO:0050852 GO:0007265 GO:0007267 5,00E-24 Tetraodon nigroviridis Uniref90
Growth factor receptor-bound protein 2 GRB2 370 GO:0031295 GO:0050900 GO:2000379 GO:0030168 GO:0007265 3,00E-17 Oreochromis niloticus nr

Ribas et al.

Ribas et al. BMC Genomics 2013 14:180   doi:10.1186/1471-2164-14-180

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