Table 4

List of the top 20 deepest contigs originated from the 454 run of brain-hypophysis-gonad axis tissues of turbot ( S . maximus)
Contig number Length No. reads Average coverage per nucleotide % GC Annotation E-value Accession Number Database
1 744 1,997 578.7 53.7 40S ribosomal protein S9 8.00E-93 UniRef90_P46781 Uniref90
19 676 1,728 541.1 45.6 Parvalbumin 4.00E-34 UniRef90_B5WX08 Uniref90
1,926 101 466 398.6 43.6 Unknown
13 663 935 382.1 51.0 Nucleolar protein family A3 4.00E-25 UniRef90_A4IHX9 Uniref90
88 787 1,545 366.8 53.2 Similar to ribosomal protein S7 5.00E-98 UniRef90_UPI0000E801DC Uniref90
44 701 930 336.4 56.0 Unknown
36 709 725 291.6 51.8 NADH dehydrogenase 1 beta 8.00E-75 UniRef90_C1BWY9 Uniref90
2 1,222 1,216 289.6 46.7 Chromobox protein homolog 3 3.00E-80 UniRef90_C3KJI6 Uniref90
6 1,103 1,335 285.0 48.4 Ribosomal protein L7 1.00E-108 dre:336710 KEGG
47 675 651 277.6 51.6 Fatty acid binding protein 11a 2.00E-49 dre:447944 KEGG
3 1,275 1,250 271.4 48.0 General transcription factor IIIA 6.00E-89 dre:445389 KEGG
92 603 687 271.2 51.9 Ribosomal protein S11 9.00E-73 UniRef90_B5FX82 Uniref90
9 759 929 270.6 50.8 Histone deacetylase complex 6.00E-74 UniRef90_C3KI01 Uniref90
179 649 738 266.8 50.0 Unknown
68 782 1,065 264.7 51.9 Ribosomal protein 1.00E-99 UniRef90_A9Z0M8 Uniref90
82 663 679 264.5 55.7 40S ribosomal protein S27a 4.00E-65 UniRef90_P68200 Uniref90
59 749 842 260.6 53.4 Ribosomal protein L12 6.00E-82 UniRef90_Q5BKW5 Uniref90
31 869 973 258.7 54.0 60S ribosomal protein L13 1.00E-101 UniRef90_B5DGD9 Uniref90
15 997 950 255.3 51.6 Ferritin 1.00E-90 UniRef90_Q4SBB8 Uniref90
4 1,346 1,340 253.2 42.6 Epididymal secretory protein E1 3.00E-70 UniRef90_C3KIM5 Uniref90

Ribas et al.

Ribas et al. BMC Genomics 2013 14:180   doi:10.1186/1471-2164-14-180

Open Data