Table 11

Representative sample of miRNAs found in the Turbot 3 database. miRNAs were identified by Blasting Turbot 3 database sequences against the miRBase
Contig number Read number Turbot 3 database annotation miRBase accession name miRBase annotation
6,514 54 Early growth response 1 MI0020478 Cricetulus griseus miR-29a stem-loop
32,392 3 LSU rRNA MI0022328 Bos taurus miR-6529 stem-loop
1,984r 97 Serine/threonine-protein phosphatase 2A MI0014190 Homo sapiens miR-3160-2 stem-loop
34,898r 2 Similar to dynamin 3 MI0000247 Mus musculus miR-204 stem-loop
49,897 2 Similar to Elongation factor 1-gamma MI0015615 Ciona intestinalis miR-4064 stem-loop
40,442 3 Similar to ORFa MI0019438 Oryzias latipes miR-133-2 stem-loop
40,442r 3 Similarity to transposases MI0001124 Oryza sativa miR169i stem-loop
10,002r 1 Spindle and kinetochore-associated protein 2-like MI0018844 Anolis carolinensis miR-301a stem-loop
8,914r 22 Unknown MI0019711 Glycine max miR5769 stem-loop
10,002 1 Unnamed protein product MI006276 Homo sapiens miR-1183 stem-loop

Ribas et al.

Ribas et al. BMC Genomics 2013 14:180   doi:10.1186/1471-2164-14-180

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