Table 1

Assembly Statistics
Organism Mouse cov-cutoff-3 Mouse cov-cutoff-10 Mouse-Trinity Chuniphyesmultidentata Sergestessimilis Pleuromamma robusta Dosidicusgigas Hormiphoracalifornensis Harmothoeimbricata
Phylum Chordata Chordata Chordata Cnidaria Arthropoda Arthropoda Mollusca Ctenophora Annelida
Tissue Heart Heart Heart Whole body Legs Whole body Mantle Whole body Scale
Raw Reads 82,886,668 82,886,668 82,886,668 103,415,276 93,597,558 64,116,306 60,661,588 64,675,964 75,608,018
Raw GC (%) 51.90 51.90 51.90 42.29 50.74 48.86 39.89 53.71 41.52
Filtered Reads 73,187,048 73,187,048 73,187,048 102,366,438 92,423,904 63,867,922 56,264,099 57,583,204 70,340,105
Assembled Reads 70,000,000 70,000,000 70,000,000 80,000,000 80,000,000 63,867,922 56,264,099 57,583,204 70,340,105
Transcripts 254,215 62,353 85,294 338,254 107,082 196,104 86,897 175,701 191,290
Total Length (Mbp) 293.55 98.84 79.12 314.99 159.59 240.05 143.09 272.23 216.66
Mean (bp) 1,154 1,585 927 931 1,490 1,224 1,646 1,549 1,132
Median (bp) 547 1,119 421 421 837 855 1,026 1,153 689
N50 (bp) 2,364 2,447 1,828 1,854 2,803 1,993 2,876 2,373 1,949
Oases Loci 77,411 20,889 70272 49,831 18,139 22,385 14,227 17,960 21,914
GC (%) 54.08 53.95 53.46 31.24 44.66 45.78 36.55 51.66 40.53

Summary statistics of the largest transcriptome assembly for each organism.

Francis et al.

Francis et al. BMC Genomics 2013 14:167   doi:10.1186/1471-2164-14-167

Open Data