Additional file 3: Figure S1..
Neighbor joining tree of the reference concatenated alignment. The NJ tree of chloroviruses is based on a concatenated alignment of 32 core protein families (7762 gap-free sites). Phylogenetic distances were computed using the WAG + G + I substitution model. Branch support was estimated from 1000 bootstrap replicates. We only show bootstrap values < 90%. Branches that differed from the ML and MP trees are colored in red. (PDF 16 kb)
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Jeanniard et al. BMC Genomics 2013 14:158 doi:10.1186/1471-2164-14-158