Additional file 3: Table S3.

RXE comparison using analysis methods implemented in cited dosage compensation studies. a Applied unique mapping. included all expressed genes and reported median values. b Applied unique mapping, then removed all genes that had a FPKM <1 and reported median values. c Applied non-unique, splicing mapping, then removed all genes that had a FPKM <1. Gene expression was calculated using cufflinks algorithm for all three analysis strategies to produce RXE values.

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Jue et al. BMC Genomics 2013 14:150   doi:10.1186/1471-2164-14-150