Additional file 1: Table S1.

Proportion of total genes removed through implementation of methods from cited dosage compensation studies. Proportion of total genes that yielded a FPKM value > 0 that would not be included in the final calculations of RXE as defined by of the authors in the methods of the studies referenced below. a Utilizing described Miller’s Jackknife/Mann–Whitney U-test approach, applied unique mapping, established all genes that had a FPKM of zero, then removed a compensatory amount of genes from the upper end of the distribution. b Applied unique mapping, then removed all genes that had a FPKM <1. c Applied non-unique, splicing mapping, then removed all genes that had a FPKM <1. d Applied non-unique, splicing mapping, then removed outliers.

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Jue et al. BMC Genomics 2013 14:150   doi:10.1186/1471-2164-14-150