Table 3

Assembly results with TAIR 10.0 CDS using SOAPdenovo and Trinity software
SOAPdenovo Trinity
Number of unigenes/transcripts (n) 83,493 103,196
Number of unigenes/transcripts mapped to TAIR CDS (n) 52,864 70,753
Total number of CDS in TAIR (n) 35,386 35,386
Total number of mapped CDS in TAIR(n) 22,435 22,433
Total length of CDS in TAIR (bp) 43,546,300 43,546,300
Total length of mapped CDS in TAIR (bp) 31,264,828 31,145,430
Total length of unigenes/transcripts (bp) 26,651,285 71,935,591
Total length of mapped unigenes/transcripts(bp) 18,193,518 55,883,786
Total length of overlapping sequences (bp) 15,234,784 44,020,562
Percentage of mapped CDS number 22,435/35,386 = 63.4% 22,433/35,386 = 63.4%

Liang et al.

Liang et al. BMC Genomics 2013 14:146   doi:10.1186/1471-2164-14-146

Open Data