Table 1

Sequence similarity between CRM1TR subsequences and CRM1A or CRM1B consensus sequences
Maximum Bitscore with CRM1_A Maximum Bitscore with CRM1_B
CRM1TR_I_S 558 712
CRM1TR_II_S 553 717
CRM1TR_I_IR 141 193
CRM1TR_II_IR.c1 115 152
CRM1TR_ II_IR.c2 132 159
CRM1TR_ II_IR.c3 134 141
CRM1TR_I_EB 182 313
CRM1TR_ II_EB 182 313
CRM1TR_ II_EA 255 180

Identity of subsequences from CRM1TR monomers at the two CRM1TR loci (I or II) to the two CRM1 subfamily variants CRM1A and CRM1B is shown in bitscores. Note that all subsequences of CRM1TR i.e. S, IR variants (IR, IR.c1, IR.c2, IR.c3) and EB have high homology to CRM1B, except end sequence variant EA, which is more similar to CRM1A.

Sharma et al.

Sharma et al. BMC Genomics 2013 14:142   doi:10.1186/1471-2164-14-142

Open Data