Table 1

Total spectra searched and identified from whole genome, GENCODE V7 transcript and protein searches
Total spectra searched Databases (size) # of distinct spectra mapped (# of distinct spectra mapped when only best match considered) # of distinct peptides identified (# of distinct peptides when only best match considered) # of distinct genomic loci/proteins/transcripts identified (# of distinct loci/transcripts/proteins when only best match considered)
998570 whole genome (~3.2 GB) 62308 (62218) 13143 (13128) 16832 (16808)
998570 GENCODE V7 transcript (~200 MB) 111138 (110738) 24503 (24406) 21032 (20985)
998570 GENCODE V7 protein (~44 MB) 115164 (114618) 26591 (26472) 20051(20013)

Results presented are at a 1% FDR. The bracketed numbers represent the number of identifications after comparing the results from the three searches and keeping only the best match.

Khatun et al.

Khatun et al. BMC Genomics 2013 14:141   doi:10.1186/1471-2164-14-141

Open Data