Table 2

Putative targets of miR-30a after whole genome expression (WGE) analysis of miR-30a overexpression
Gene name Pre-miR-30a miR-159 k.d. Fold-change Score
ACP2 103.98 160.67 0.65 −6.23
ARID5B 97.55 145.53 0.67 −2.96
ARVCF 44.57 61.42 0.73 −2.66
    ATG12
134.92 192.78 0.70 −3.36
    AVEN
89.8 166.93 0.54 −9.51
    BNIP3L
64.7 95.14 0.68 −4.93
    C14orf129
165.21 278.97 0.59 −1.92
    C1orf19
291.73 475.23 0.61 −11.7
    C2orf30
175.86 317.2 0.55 −10.18
    C3orf57
855.03 1500.97 0.57 −1.39
    CHMP2B
294.63 447.1 0.66 −7.54
    DCUN1D3
85.59 141.19 0.61 1.38
    DPY19L1
194.24 277.5 0.70 −4.87
    DPYSL2
315.4 502.3 0.63 −5.31
EDG3 100.43 149.23 0.67 −1.99
    ELMOD2
81.24 123.28 0.66 1.74
    FAM18B
121.66 169.09 0.72 −4.05
    FOXD1
104.98 150.49 0.70 −2.49
    GNAI2
229.93 496.33 0.46 −11.2
GNG10 91.32 139 0.66 −7.76
    GNPDA1
489.02 831.37 0.59 −0.6
    KDELC2
116.08 204.6 0.57 −3.39
KIAA0241 99.59 151.45 0.66 −2.69
    NECAP1
157.52 253.56 0.62 −6.58
    PDSS1
257.51 381.04 0.68 5.63
    PGM1
196.55 309.58 0.63 −6.5
    PIK3R2
762.04 1060.6 0.72 −5.76
    PPP1R2
279.79 504.81 0.55 −9.54
REEP3 56.69 79.57 0.71 −5.93
REXO4 174.68 257.94 0.68 −6.87
    RPA2
385.11 641.74 0.60 −1.52
    SEC23A
54.91 75.17 0.73 −4.48
    TFDP1
709.63 1059.53 0.67 −7.84
    TM4SF1
436.61 828.33 0.53 −6.84
TRIB3 277.11 422.9 0.66 −2.06
VKORC1L1 335.84 525.07 0.64 −3.44

Significantly downregulated genes after Pre-miR-30a transfection. Only potential targets with 3′UTR seed sequences of miR-30a are included. “Scores” are based on the PITA algorithm, as described in Materials and Methods. Targets common to miR-30 family WGE analysis are underlined.

Ouzounova et al.

Ouzounova et al. BMC Genomics 2013 14:139   doi:10.1186/1471-2164-14-139

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