Table 1

Putative cytochrome P450s in S. virginiae IBL14 with their closest homologs
IDa Sizeb Best matches in the database
Species Protein identifier CYP family AA overlapd identitye%
Svu001 464 Streptomyces sp. Mg1 ZP_05001937 new 598 66
Photobacterium profundum 3TCK ZP_01217946 113 25
Svu002 361 Streptomyces virginiae ABR68806 105 L 134 100
Streptomyces clavuligerus ATCC 27064 ZP_06769587 93.2 66
Svu003 439 Streptomyces venezuelae ATCC 10712 CCA59424 105C 608 77
Streptomyces cattleya NRRL 8057 YP_004920090 105C 553 70
Svu004 398 Streptomyces virginiae ABR68806 105 L 794 99
Streptomyces sp. ACT50-5 BAG16627 529 69
Svu005 400 Streptomyces sp. C ZP_07285089 105D 595 74
Streptomyces avermitilis MA-4680 BAC75180 105D7 529 69
Svh01 399 Streptomyces virginiae ABR68805 105C1 797 99
Streptomyces viridochromogenes DSM 40736 ZP_07307444 105 703 87
Svu006 403 Streptomyces virginiae ABR68807 107 L14 713 99
Streptomyces sp. C ZP_07284721 107 L14 611 87
Svu007 351 Streptomyces sp. C ZP_07290554 107E 609 87
Streptomyces violaceusniger Tu 4113 YP_004815015 540 77
Svu008 406 Streptomyces sp. C ZP_07285026 107 L14 604 77
Streptomyces sp. Mg1 ZP_04997607 107 L14 584 76
Svu009 415 Streptomyces sp. C ZP_07286517 107 L 727 85
Streptomyces sp. Mg1 ZP_04999247 107 L 484 59
Svu010 396 Streptomyces sp. Mg1 ZP_04997607 107 L14 578 74
Streptomyces sp. C ZP_07285026 107 L14 556 72
Svu011 405 Streptomyces sp. C ZP_07287693 107 L 728 91
Streptomyces clavuligerus ATCC 27064 ZP_05005324 107 L 601 75
Svu012 430 Streptomyces sp. C ZP_07287209 107 L 808 92
Streptomyces sp. Mg1 ZP_05000207 107 L 780 91
Svu013 396 Streptomyces sp. C ZP_07287353 107 L 578 75
Streptomyces hygroscopicus subsp. jinggangensis 5008 AEY86095 383 54
Svu014 395 Streptomyces sviceus ATCC 29083 ZP_06921933 107 L 961 80
Streptomyces venezuelae ATCC 10712 CCA53921 107 L 549 79
Svu015 406 Streptomyces sp. Mg1 ZP_05001939 107 L 667 80
Streptomyces scabiei 87.22 YP_003488837 107 L 640 77
Svu016 406 Amycolatopsis editerranei U32 YP_003767608 107 M 482 63
Actinomadura hibisc BAA23153 387 55
Svu017 368 Streptomyces avermitilis MA-4680 NP_823237 197A1 436 64
Streptomyces scabiei 87.22 YP_003487606 389 59
Svu018 393 Streptomyces venezuelae ATCC 10712 CCA55152 121A 509 67
Mycobacterium tuberculosis 02_1987 ZP_06504929 121A 464 57
Svu019 421 Streptomyces sp. C ZP_07287311 124B 782 94
Streptomyces pristinaespiralis ATCC 25486 ZP_06909795 124B 566 70
Svu020 416 Streptomyces sp. C ZP_07289557 147A 731 91
Streptomyces peucetius ATCC 27952 CAE53704 147A 667 79
Svu021 421 Streptomyces sp. C ZP_07290439 152A 515 71
Streptomyces sp. SirexAA-E YP_004806454 152A 429 58
Svu022 412 Streptomyces sp. Mg1 ZP_05002011 154H 742 91
Streptomyces sp. SirexAA-E YP_004804189 154H 666 83
Svu023 409 Streptomyces sp. C ZP_07285064 157A 773 93
Streptomyces sp. Mg1 ZP_05002010 157A 734 88
Svu024 450 Streptomyces sp. Mg1 ZP_05002596 157C 723 82
Streptomyces hygroscopicus ATCC 53653 ZP_07300920 157C 574 64
Svu025 89 Streptomyces tubercidicus AAT45286 185A1 85.9 47
Actinosynnema mirum DSM 43827 YP_003102184 185A 84.7 51
Svu026 409 Streptomyces violaceusniger Tu 4113 YP_004813101 191A 313 44
Rhodococcus opacus B4 YP_002781958 300 43
Svu027 398 Streptomyces sp. C ZP_07286547 191A 756 92
Streptomyces sp. Mg1 ZP_04998169 191A 733 89
Svu028 446 Streptomyces sp. Mg1 ZP_04997583 191A 699 88
Streptomyces sp. C ZP_07290135 191A 692 90
Svu029 476 Singulisphaera acidiphila DSM 18658 ZP_09568426 197A 199 33
Streptomyces roseosporus NRRL 11379 ZP_04712663 197A 191 32
Svu030 447 Streptomyces sp. C ZP_07289871 197B 713 82
Streptomyces sp. Mg1 ZP_05001362 197B 680 77
Svu031 710 Streptomyces sp. C ZP_07284739 197B 353 79
Streptomyces clavuligerus ATCC 27064 ZP_05006237 350 55
Svu032 416 Streptomyces flavogriseus ATCC 33331 YP_004921083 247A 693 81
Frankia alni ACN14a YP_712777 247A 573 70

a The name of the putative CYPs in S. virginiae IBL14.

b Amino acid number of putative CYPs.

c Closest homologs in Genbank and the family classification of CYPs searched in CYPED.

d Number of amino acid overlap, which exceeds the protein size, is due to the introduction of gaps during BLAST comparison.

e The highest percent identity for a set of aligned segments to the same subject sequence.

Li et al.

Li et al. BMC Genomics 2013 14:130   doi:10.1186/1471-2164-14-130

Open Data