Table 1

Modules identified using WGCNA and a most enriched GO category in each module
Module Module size (genes) % of Genes with functional annotation Top enriched GO category Fold GO enrichment GO enrichment p-value
1. Green 473 93.23 intracellular transport 3.90 2.75E-07
2. Brown 387 82.95 cell cycle 10.08 1.56E-25
3. Yellow 256 62.89 extracellular matrix part 18.83 3.96E-17
4. Red 227 83.26 cytoskeleton 3.88 1.75E-04
5. Turquoise 103 38.83 organ growth 92.03 4.01E-04
6. Greenyellow 99 77.78 response to stress 7.58 8.30E-04
7. Blue 81 32.10 low annotation
8. Magenta 67 28.36 low annotation
9. Purple 58 86.21 actin cytoskeleton 13.87 1.74E-02
10. Tan 58 87.93 antigen processing 69.02 1.46E-13
11. Pink 57 80.70 immune response 19.75 4.01E-07
12. Salmon 39 94.87 alpha-catenin binding 314.76 5.89E-03
13. Black 33 69.70 no GO enrichment
14. Lightcyan 25 84.00 lipid biosynthetic process 38.52 1.97E-10
15. Cyan 24 91.67 muscle protein 76.39 1.69E-20

Additional file 1: Table S1 contains full tables with all of the GO categories and clusters of GO categories enriched.

Stanley et al.

Stanley et al. BMC Genomics 2013 14:13   doi:10.1186/1471-2164-14-13

Open Data