Open Access Research article

Massive screening of copy number population-scale variation in Bos taurus genome

Francesco Cicconardi123*, Giovanni Chillemi2, Anna Tramontano35, Cinzia Marchitelli6, Alessio Valentini1, Paolo Ajmone-Marsan4 and Alessandro Nardone1

Author Affiliations

1 Department for innovation in biological, agro-food and forest systems, University of Tuscia, via de Lellis, Viterbo, 01100, Italy

2 CASPUR, Inter-University Consortium for Supercomputing in Research, via dei Tizii 6b, Roma, 00185, Italy

3 Department of Physics, Sapienza University of Rome, P.le A. Moro 5, Rome, 00185, Italy

4 Zootechnical institute, University Cattolica Sacro Cuore, Piacenza, 29100, Italy

5 IIT@Sapienza, Center for life nano science, Rome, 00185, Italy

6 Consiglio per la ricerca e la sperimentazione in agricoltura - CRA-PCM, Animal Production Research Centre, via Salaria 31, Monterotondo, 00015, Italy

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BMC Genomics 2013, 14:124  doi:10.1186/1471-2164-14-124

Published: 26 February 2013

Additional files

Additional file 1:

CNVs dataset. Complete list of CNV found in this study.

Format: TSV Size: 212KB Download file

Open Data

Additional file 2:

CNVRs dataset. Complete list of CNVR found in this study. It also includes the list of the types of CNV in each region.

Format: TSV Size: 16KB Download file

Open Data

Additional file 3:

CNV distribution. List of CNVs and their copy number, length, frequency in the population and number of genes included.

Format: TSV Size: 165KB Download file

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Additional file 4:

CNV gene content. List of genes in each copy number variant.

Format: TSV Size: 4.1MB Download file

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Additional file 5:

Gene list. Complete list of the involved genes.

Format: TSV Size: 308KB Download file

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Additional file 6:

Breed specific genes. Complete list of genes specific for each of the five studied Bos taurus breeds.

Format: TSV Size: 21KB Download file

Open Data

Additional file 7:

Gene frequency. Complete list of genes and their frequency for each Bos taurus breed.

Format: TSV Size: 48KB Download file

Open Data